- recipe bioconductor-cellid
Unbiased Extraction of Single Cell gene signatures using Multiple Correspondence Analysis
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/CelliD.html
- License:
GPL-3 + file LICENSE
- Recipe:
CelliD is a clustering-free multivariate statistical method for the robust extraction of per-cell gene signatures from single-cell RNA-seq. CelliD allows unbiased cell identity recognition across different donors, tissues-of-origin, model organisms and single-cell omics protocols. The package can also be used to explore functional pathways enrichment in single cell data.
- package bioconductor-cellid¶
-
- Versions:
1.6.0-0
,1.2.1-1
,1.2.1-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-fgsea
>=1.24.0,<1.25.0
bioconductor-scater
>=1.26.0,<1.27.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
r-seurat
>=4.0.1
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cellid
and update with:
conda update bioconductor-cellid
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cellid:<tag>
(see bioconductor-cellid/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cellid/README.html)