recipe bioconductor-cellid

Unbiased Extraction of Single Cell gene signatures using Multiple Correspondence Analysis

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/CelliD.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-cellid/meta.yaml

CelliD is a clustering-free multivariate statistical method for the robust extraction of per-cell gene signatures from single-cell RNA-seq. CelliD allows unbiased cell identity recognition across different donors, tissues-of-origin, model organisms and single-cell omics protocols. The package can also be used to explore functional pathways enrichment in single cell data.

package bioconductor-cellid

Versions:

1.2.1-1,  1.2.1-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-fgsea >=1.20.0,<1.21.0

• bioconductor-scater >=1.22.0,<1.23.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-fastmatch

• r-ggplot2

• r-glue

• r-irlba

• r-matrix

• r-matrixstats

• r-pbapply

• r-rcpp

• r-rcpparmadillo

• r-reticulate

• r-rtsne

• r-seurat >=4.0.1

• r-stringr

• r-tictoc

• r-umap

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cellid

and update with:

conda update bioconductor-cellid

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cellid:<tag>

(see bioconductor-cellid/tags for valid values for <tag>)

Download stats

Link to this page

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