recipe bioconductor-cellmixs

Evaluate Cellspecific Mixing

Homepage

https://bioconductor.org/packages/3.11/bioc/html/CellMixS.html

License

GPL (>=2)

Recipe

/bioconductor-cellmixs/meta.yaml

Evaluate Cellspecific Mixing Scores (CMS) for different batches/groups in scRNA-seq data.

package bioconductor-cellmixs

Versions

1.4.0-0,  1.2.0-0,  1.0.0-1

Depends

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-biocneighbors >=1.6.0,<1.7.0

• bioconductor-biocparallel >=1.22.0,<1.23.0

• bioconductor-scater >=1.16.0,<1.17.0

• bioconductor-singlecellexperiment >=1.10.0,<1.11.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

• r-cowplot

• r-dplyr

• r-ggplot2

• r-ggridges

• r-ksamples

• r-listarrays

• r-magrittr

• r-purrr

• r-tidyr

• r-viridis

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cellmixs

and update with:

conda update bioconductor-cellmixs

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cellmixs:<tag>

(see bioconductor-cellmixs/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cellmixs/README.html)