- recipe bioconductor-cellmixs
Evaluate Cellspecific Mixing
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/CellMixS.html
- License
GPL (>=2)
- Recipe
CellMixS provides metrics and functions to evaluate batch effects, data integration and batch effect correction in single cell trancriptome data with single cell resolution. Results can be visualized and summarised on different levels, e.g. on cell, celltype or dataset level.
- package bioconductor-cellmixs¶
-
- Versions
1.10.0-0
,1.8.0-0
,1.6.1-0
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
- Depends
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocneighbors
>=1.12.0,<1.13.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-scater
>=1.22.0,<1.23.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-cellmixs
and update with:
conda update bioconductor-cellmixs
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cellmixs:<tag>
(see bioconductor-cellmixs/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cellmixs/README.html)