recipe bioconductor-cellnoptr

This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/CellNOptR.html

License

GPL-3

Recipe

/bioconductor-cellnoptr/meta.yaml

Links

biotools: cellnoptr, doi: 10.1186/1752-0509-6-133

package bioconductor-cellnoptr

Versions

1.30.0-1, 1.28.0-0, 1.26.0-0, 1.24.1-0, 1.23.0-0, 1.22.0-0

Depends

• bioconductor-graph >=1.62.0,<1.63.0

• bioconductor-rbgl >=1.60.0,<1.61.0

• bioconductor-rgraphviz >=2.28.0,<2.29.0

• libgcc-ng >=7.3.0

• r-base >=3.6,<3.7.0a0

• r-ggplot2

• r-hash

• r-igraph

• r-rcurl

• r-stringi

• r-stringr

• r-xml

Required By

• bioconductor-cnordt

• bioconductor-cnorfuzzy

• bioconductor-cnorode

• bioconductor-cnorfeeder

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cellnoptr

and update with:

conda update bioconductor-cellnoptr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cellnoptr:<tag>

(see bioconductor-cellnoptr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cellnoptr/README.html)