-
recipe
bioconductor-cemitool¶ The CEMiTool package unifies the discovery and the analysis of coexpression gene modules in a fully automatic manner, while providing a user-friendly html report with high quality graphs. Our tool evaluates if modules contain genes that are over-represented by specific pathways or that are altered in a specific sample group. Additionally, CEMiTool is able to integrate transcriptomic data with interactome information, identifying the potential hubs on each network.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/CEMiTool.html
- License
GPL-3
- Recipe
-
package
bioconductor-cemitool¶ 
- Versions
1.6.10-0
- Depends bioconductor-clusterprofiler
>=3.10.0,<3.11.0
- Depends bioconductor-fgsea
>=1.8.0,<1.9.0
- Depends bioconductor-geneoverlap
>=1.18.0,<1.19.0
- Depends bioconductor-limma
>=3.38.0,<3.39.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-data.table
>=1.9.4
- Depends r-dplyr
- Depends r-dt
- Depends r-ff
- Depends r-ffbase
- Depends r-ggdendro
- Depends r-ggplot2
- Depends r-ggpmisc
- Depends r-ggrepel
- Depends r-ggthemes
- Depends r-grbase
- Depends r-gridextra
- Depends r-gtable
- Depends r-htmltools
- Depends r-igraph
- Depends r-intergraph
- Depends r-knitr
- Depends r-matrixstats
- Depends r-network
- Depends r-plyr
- Depends r-pracma
- Depends r-rcolorbrewer
- Depends r-rmarkdown
- Depends r-scales
- Depends r-sna
- Depends r-stringr
- Depends r-tidyr
- Depends r-wgcna
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-cemitool
and update with:
conda update bioconductor-cemitool
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cemitool:<tag>
(see bioconductor-cemitool/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cemitool/README.html)