- recipe bioconductor-cemitool
Co-expression Modules identification Tool
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/CEMiTool.html
- License:
GPL-3
- Recipe:
The CEMiTool package unifies the discovery and the analysis of coexpression gene modules in a fully automatic manner, while providing a user-friendly html report with high quality graphs. Our tool evaluates if modules contain genes that are over-represented by specific pathways or that are altered in a specific sample group. Additionally, CEMiTool is able to integrate transcriptomic data with interactome information, identifying the potential hubs on each network.
- package bioconductor-cemitool¶
-
- Versions:
1.22.0-0
,1.18.1-0
,1.16.0-0
,1.14.1-0
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.3-0
,1.6.10-0
- Depends:
bioconductor-clusterprofiler
>=4.6.0,<4.7.0
bioconductor-fgsea
>=1.24.0,<1.25.0
r-base
>=4.2,<4.3.0a0
r-data.table
>=1.9.4
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cemitool
and update with:
conda update bioconductor-cemitool
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cemitool:<tag>
(see bioconductor-cemitool/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cemitool/README.html)