- recipe bioconductor-cepo
Cepo for the identification of differentially stable genes
- Homepage:
- License:
MIT + file LICENSE
- Recipe:
Defining the identity of a cell is fundamental to understand the heterogeneity of cells to various environmental signals and perturbations. We present Cepo, a new method to explore cell identities from single-cell RNA-sequencing data using differential stability as a new metric to define cell identity genes. Cepo computes cell-type specific gene statistics pertaining to differential stable gene expression.
- package bioconductor-cepo¶
-
- Versions:
1.4.0-0
,1.0.0-0
- Depends:
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-delayedarray
>=0.24.0,<0.25.0
bioconductor-delayedmatrixstats
>=1.20.0,<1.21.0
bioconductor-gseabase
>=1.60.0,<1.61.0
bioconductor-hdf5array
>=1.26.0,<1.27.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cepo
and update with:
conda update bioconductor-cepo
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cepo:<tag>
(see bioconductor-cepo/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cepo/README.html)