- recipe bioconductor-cexor
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
- Homepage:
- License:
Artistic-2.0 | GPL-2 + file LICENSE
- Recipe:
- Links:
biotools: cexor, doi: 10.14806/ej.21.0.837
Strand specific peak-pair calling in ChIP-exo replicates. The cumulative Skellam distribution function is used to detect significant normalised count differences of opposed sign at each DNA strand (peak-pairs). Then, irreproducible discovery rate for overlapping peak-pairs across biological replicates is computed.
- package bioconductor-cexor¶
-
- Versions:
1.36.0-0
,1.32.0-0
,1.28.0-1
,1.28.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.20.0-0
,1.18.0-0
,1.36.0-0
,1.32.0-0
,1.28.0-1
,1.28.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.20.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.8.0-0
- Depends:
bioconductor-genomation
>=1.30.0,<1.31.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cexor
and update with:
conda update bioconductor-cexor
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cexor:<tag>
(see bioconductor-cexor/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cexor/README.html)