bioconductor-cexor

downloads

Strand specific peak-pair calling in ChIP-exo replicates. The cumulative Skellam distribution function (package ‘skellam’) is used to detect significant normalised count differences of opposed sign at each DNA strand (peak-pairs). Irreproducible discovery rate for overlapping peak-pairs across biological replicates is estimated using the package ‘idr’.

Home http://bioconductor.org/packages/release/bioc/html/CexoR.html
Versions 1.8.0
License Artistic-2.0 | GPL-2 + file LICENSE
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-cexor

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cexor

and update with:

conda update bioconductor-cexor

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-cexor.