recipe bioconductor-cghbase

CGHbase: Base functions and classes for arrayCGH data analysis.

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/CGHbase.html

License:

GPL

Recipe:

/bioconductor-cghbase/meta.yaml

Links:

biotools: cghbase, doi: 10.1016/j.ejmg.2005.10.046

Contains functions and classes that are needed by arrayCGH packages.

package bioconductor-cghbase

Versions:

1.58.0-0,  1.54.0-0,  1.52.0-0,  1.50.0-1,  1.50.0-0,  1.48.0-0,  1.46.0-0,  1.44.0-1,  1.42.0-0, 

1.58.0-0,  1.54.0-0,  1.52.0-0,  1.50.0-1,  1.50.0-0,  1.48.0-0,  1.46.0-0,  1.44.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-0,  1.32.0-1,  1.32.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-marray >=1.76.0,<1.77.0

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-qdnaseq

• bioconductor-genebreak

• bioconductor-cghnormaliter

• bioconductor-cghcall

• bioconductor-cghregions

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cghbase

and update with:

conda update bioconductor-cghbase

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cghbase:<tag>

(see bioconductor-cghbase/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cghbase/README.html)