recipe bioconductor-cghcall

Calling aberrations for array CGH tumor profiles.

Homepage

https://bioconductor.org/packages/3.10/bioc/html/CGHcall.html

License

GPL (http://www.gnu.org/copyleft/gpl.html)

Recipe

/bioconductor-cghcall/meta.yaml

Links

biotools: cghcall, doi: 10.1093/bioinformatics/btm030

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

package bioconductor-cghcall

(downloads) docker_bioconductor-cghcall

Versions

2.48.0-0, 2.46.0-1, 2.44.0-1, 2.44.0-0, 2.42.0-0, 2.40.0-0, 2.38.0-0, 2.34.1-0, 2.34.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cghcall

and update with:

conda update bioconductor-cghcall

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cghcall:<tag>

(see bioconductor-cghcall/tags for valid values for <tag>)