- recipe bioconductor-cghcall
Calling aberrations for array CGH tumor profiles.
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/CGHcall.html
- License:
- Recipe:
- Links:
biotools: cghcall, doi: 10.1093/bioinformatics/btm030
Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.
- package bioconductor-cghcall¶
-
- Versions:
2.60.0-0
,2.56.0-0
,2.54.0-0
,2.52.0-1
,2.52.0-0
,2.50.0-0
,2.48.0-0
,2.46.0-1
,2.44.0-1
,2.60.0-0
,2.56.0-0
,2.54.0-0
,2.52.0-1
,2.52.0-0
,2.50.0-0
,2.48.0-0
,2.46.0-1
,2.44.0-1
,2.44.0-0
,2.42.0-0
,2.40.0-0
,2.38.0-0
,2.34.1-0
,2.34.0-0
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-cghbase
>=1.58.0,<1.59.0
bioconductor-dnacopy
>=1.72.0,<1.73.0
bioconductor-impute
>=1.72.0,<1.73.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cghcall
and update with:
conda update bioconductor-cghcall
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cghcall:<tag>
(see bioconductor-cghcall/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cghcall/README.html)