Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-cghcall
and update with:
conda update bioconductor-cghcall
A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-cghcall.