recipe bioconductor-cghcall

Calling aberrations for array CGH tumor profiles.

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/CGHcall.html

License:

GPL (http://www.gnu.org/copyleft/gpl.html)

Recipe:

/bioconductor-cghcall/meta.yaml

Links:

biotools: cghcall, doi: 10.1093/bioinformatics/btm030

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

package bioconductor-cghcall

Versions:

2.60.0-0,  2.56.0-0,  2.54.0-0,  2.52.0-1,  2.52.0-0,  2.50.0-0,  2.48.0-0,  2.46.0-1,  2.44.0-1, 

2.60.0-0,  2.56.0-0,  2.54.0-0,  2.52.0-1,  2.52.0-0,  2.50.0-0,  2.48.0-0,  2.46.0-1,  2.44.0-1,  2.44.0-0,  2.42.0-0,  2.40.0-0,  2.38.0-0,  2.34.1-0,  2.34.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-cghbase >=1.58.0,<1.59.0

• bioconductor-dnacopy >=1.72.0,<1.73.0

• bioconductor-impute >=1.72.0,<1.73.0

• r-base >=4.2,<4.3.0a0

• r-snowfall

Required By:

• bioconductor-cghnormaliter

• bioconductor-qdnaseq

• bioconductor-genebreak

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cghcall

and update with:

conda update bioconductor-cghcall

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cghcall:<tag>

(see bioconductor-cghcall/tags for valid values for <tag>)

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