- recipe bioconductor-chetah
Fast and accurate scRNA-seq cell type identification
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/CHETAH.html
- License:
file LICENSE
- Recipe:
CHETAH (CHaracterization of cEll Types Aided by Hierarchical classification) is an accurate, selective and fast scRNA-seq classifier. Classification is guided by a reference dataset, preferentially also a scRNA-seq dataset. By hierarchical clustering of the reference data, CHETAH creates a classification tree that enables a step-wise, top-to-bottom classification. Using a novel stopping rule, CHETAH classifies the input cells to the cell types of the references and to "intermediate types": more general classifications that ended in an intermediate node of the tree.
- package bioconductor-chetah¶
-
- Versions:
1.14.0-0
,1.9.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.4-0
- Depends:
bioconductor-biodist
>=1.70.0,<1.71.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-chetah
and update with:
conda update bioconductor-chetah
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-chetah:<tag>
(see bioconductor-chetah/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-chetah/README.html)