- recipe bioconductor-chic
Quality Control Pipeline for ChIP-Seq Data
- Homepage:
- License:
GPL-2
- Recipe:
Quality control (QC) pipeline for ChIP-seq data using a comprehensive set of QC metrics, including previously proposed metrics as well as novel ones, based on local characteristics of the enrichment profile. The package provides functions to calculate a set of QC metrics, a compendium with reference values and machine learning models to score sample quality.
- package bioconductor-chic¶
-
- Versions:
1.18.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.4.0-1
,1.2.0-1
,1.18.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.4.0-1
,1.2.0-1
,1.2.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-chic.data
>=1.18.0,<1.19.0
bioconductor-genomeintervals
>=1.54.0,<1.55.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-chic
and update with:
conda update bioconductor-chic
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-chic:<tag>
(see bioconductor-chic/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-chic/README.html)