recipe bioconductor-chic

Quality control (QC) pipeline for ChIP-seq data using a comprehensive set of QC metrics, including previously proposed metrics as well as novel ones, based on local characteristics of the enrichment profile. The package provides functions to calculate a set of QC metrics, a compendium with reference values and machine learning models to score sample quality.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ChIC.html

License

GPL-2

Recipe

/bioconductor-chic/meta.yaml

package bioconductor-chic

Versions

1.2.0-1, 1.2.0-0

Depends

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-chic.data >=1.2.0,<1.3.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• r-base >=3.5.1,<3.5.2.0a0

• r-caret

• r-catools

• r-progress

• r-spp

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chic

and update with:

conda update bioconductor-chic

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chic:<tag>

(see bioconductor-chic/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chic/README.html)