recipe bioconductor-chicago

CHiCAGO: Capture Hi-C Analysis of Genomic Organization

Homepage

https://bioconductor.org/packages/3.10/bioc/html/Chicago.html

License

Artistic-2.0

Recipe

/bioconductor-chicago/meta.yaml

Links

biotools: chicago

A pipeline for analysing Capture Hi-C data.

package bioconductor-chicago

Versions

1.14.0-0, 1.12.0-1, 1.12.0-0, 1.10.1-0, 1.8.0-0, 1.6.0-0, 1.4.0-0, 1.2.0-0

Depends

• r-base >=3.6,<3.7.0a0

• r-data.table

• r-delaporte

• r-hmisc

• r-mass

• r-matrixstats

Required By

• bioconductor-pchicdata

• chicagotools

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chicago

and update with:

conda update bioconductor-chicago

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chicago:<tag>

(see bioconductor-chicago/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chicago/README.html)