Package Recipe 'bioconductor-chimeraviz'

recipe bioconductor-chimeraviz

Visualization tools for gene fusions

Homepage:: https://bioconductor.org/packages/3.16/bioc/html/chimeraviz.html
License:: Artistic-2.0
Recipe:: /bioconductor-chimeraviz/meta.yaml

chimeraviz manages data from fusion gene finders and provides useful visualization tools.

package bioconductor-chimeraviz¶

Versions:

1.24.0-0, 1.20.0-0, 1.18.0-0, 1.16.1-0, 1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-1, 1.8.0-0,

1.24.0-0, 1.20.0-0, 1.18.0-0, 1.16.1-0, 1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-1, 1.8.0-0, 1.6.2-0, 1.0.4-0

Depends:

bioconductor-annotationdbi >=1.60.0,<1.61.0
bioconductor-annotationfilter >=1.22.0,<1.23.0
bioconductor-biocstyle >=2.26.0,<2.27.0
bioconductor-biostrings >=2.66.0,<2.67.0
bioconductor-ensembldb >=2.22.0,<2.23.0
bioconductor-genomeinfodb >=1.34.0,<1.35.0
bioconductor-genomicalignments >=1.34.0,<1.35.0
bioconductor-genomicranges >=1.50.0,<1.51.0
bioconductor-graph >=1.76.0,<1.77.0
bioconductor-gviz >=1.42.0,<1.43.0
bioconductor-iranges >=2.32.0,<2.33.0
bioconductor-org.hs.eg.db >=3.16.0,<3.17.0
bioconductor-org.mm.eg.db >=3.16.0,<3.17.0
bioconductor-rgraphviz >=2.42.0,<2.43.0
bioconductor-rsamtools >=2.14.0,<2.15.0
bioconductor-s4vectors >=0.36.0,<0.37.0
bowtie2
r-base >=4.2,<4.3.0a0
r-checkmate
r-data.table
r-dplyr
r-dt
r-gtools
r-magick
r-plyr
r-rcircos
r-rcolorbrewer
r-rmarkdown

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-chimeraviz

and update with:

conda update bioconductor-chimeraviz

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chimeraviz:<tag>

(see bioconductor-chimeraviz/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chimeraviz/README.html)