recipe bioconductor-chimeraviz

Visualization tools for gene fusions

Homepage

https://bioconductor.org/packages/3.11/bioc/html/chimeraviz.html

License

Artistic-2.0

Recipe

/bioconductor-chimeraviz/meta.yaml

chimeraviz manages data from fusion gene finders and provides useful visualization tools.

package bioconductor-chimeraviz

Versions

1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.2-0,  1.0.4-0

Depends

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-annotationfilter >=1.12.0,<1.13.0

• bioconductor-biocstyle >=2.16.0,<2.17.0

• bioconductor-biostrings >=2.56.0,<2.57.0

• bioconductor-ensembldb >=2.12.0,<2.13.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicalignments >=1.24.0,<1.25.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-graph >=1.66.0,<1.67.0

• bioconductor-gviz >=1.32.0,<1.33.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-org.hs.eg.db >=3.11.0,<3.12.0

• bioconductor-org.mm.eg.db >=3.11.0,<3.12.0

• bioconductor-rgraphviz >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bowtie2

• r-argumentcheck

• r-base >=4.0,<4.1.0a0

• r-data.table

• r-dplyr

• r-dt

• r-gtools

• r-magick

• r-plyr

• r-rcircos

• r-rcolorbrewer

• r-rmarkdown

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chimeraviz

and update with:

conda update bioconductor-chimeraviz

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chimeraviz:<tag>

(see bioconductor-chimeraviz/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chimeraviz/README.html)