recipe bioconductor-chimeraviz

chimeraviz manages data from fusion gene finders and provides useful visualization tools.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/chimeraviz.html

License

Artistic-2.0

Recipe

/bioconductor-chimeraviz/meta.yaml

package bioconductor-chimeraviz

Versions

1.8.0-0, 1.6.2-0, 1.0.4-0

Depends

• bioconductor-annotationdbi >=1.44.0,<1.45.0

• bioconductor-annotationfilter >=1.6.0,<1.7.0

• bioconductor-biocstyle >=2.10.0,<2.11.0

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-ensembldb >=2.6.0,<2.7.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicalignments >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-graph >=1.60.0,<1.61.0

• bioconductor-gviz >=1.26.0,<1.27.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-org.hs.eg.db >=3.7.0,<3.8.0

• bioconductor-org.mm.eg.db >=3.7.0,<3.8.0

• bioconductor-rgraphviz >=2.26.0,<2.27.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• r-argumentcheck

• r-base >=3.5.1,<3.5.2.0a0

• r-data.table

• r-dplyr

• r-dt

• r-plyr

• r-rcircos

• r-rcolorbrewer

• r-rmarkdown

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chimeraviz

and update with:

conda update bioconductor-chimeraviz

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chimeraviz:<tag>

(see bioconductor-chimeraviz/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chimeraviz/README.html)