recipe bioconductor-chipanalyser

ChIPanalyser: Predicting Transcription Factor Binding Sites

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ChIPanalyser.html

License:

GPL-3

Recipe:

/bioconductor-chipanalyser/meta.yaml

ChIPanalyser is a package to predict and understand TF binding by utilizing a statistical thermodynamic model. The model incorporates 4 main factors thought to drive TF binding: Chromatin State, Binding energy, Number of bound molecules and a scaling factor modulating TF binding affinity. Taken together, ChIPanalyser produces ChIP-like profiles that closely mimic the patterns seens in real ChIP-seq data.

package bioconductor-chipanalyser

Versions:

1.20.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-biocmanager

• r-rcolorbrewer

• r-rcpproll

• r-rocr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-chipanalyser

and update with:

conda update bioconductor-chipanalyser

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipanalyser:<tag>

(see bioconductor-chipanalyser/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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