recipe bioconductor-chipcomp

Quantitative comparison of multiple ChIP-seq datasets

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ChIPComp.html

License:

GPL

Recipe:

/bioconductor-chipcomp/meta.yaml

Links:

biotools: chipcomp

ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.

package bioconductor-chipcomp

Versions:

1.28.0-0,  1.24.0-2,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-2,  1.20.0-1,  1.20.0-0,  1.18.0-0, 

1.28.0-0,  1.24.0-2,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-2,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0

• bioconductor-bsgenome.mmusculus.ucsc.mm9 >=1.4.0,<1.5.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-chipcomp

and update with:

conda update bioconductor-chipcomp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipcomp:<tag>

(see bioconductor-chipcomp/tags for valid values for <tag>)

Download stats

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