recipe bioconductor-chipcomp

Quantitative comparison of multiple ChIP-seq datasets

Homepage

https://bioconductor.org/packages/3.14/bioc/html/ChIPComp.html

License

GPL

Recipe

/bioconductor-chipcomp/meta.yaml

Links

biotools: chipcomp

ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.

package bioconductor-chipcomp

Versions

1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-2,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1, 

1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-2,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.0.0-0

Depends

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0

• bioconductor-bsgenome.mmusculus.ucsc.mm9 >=1.4.0,<1.5.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chipcomp

and update with:

conda update bioconductor-chipcomp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipcomp:<tag>

(see bioconductor-chipcomp/tags for valid values for <tag>)

Download stats

Link to this page

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