- recipe bioconductor-chipcomp
Quantitative comparison of multiple ChIP-seq datasets
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/ChIPComp.html
- License
GPL
- Recipe
- Links
biotools: chipcomp
ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.
- package bioconductor-chipcomp¶
-
- Versions
1.24.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-2
,1.20.0-1
,1.20.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.24.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-2
,1.20.0-1
,1.20.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.0.0-0
- Depends
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-bsgenome.hsapiens.ucsc.hg19
>=1.4.0,<1.5.0
bioconductor-bsgenome.mmusculus.ucsc.mm9
>=1.4.0,<1.5.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-chipcomp
and update with:
conda update bioconductor-chipcomp
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-chipcomp:<tag>
(see bioconductor-chipcomp/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-chipcomp/README.html)