recipe bioconductor-chipcomp

ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ChIPComp.html

License

GPL

Recipe

/bioconductor-chipcomp/meta.yaml

Links

biotools: chipcomp

package bioconductor-chipcomp

Versions

1.12.0-0, 1.10.0-0, 1.8.0-0, 1.6.0-0, 1.0.0-0

Depends

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0

• bioconductor-bsgenome.mmusculus.ucsc.mm9 >=1.4.0,<1.5.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-limma >=3.38.0,<3.39.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-rtracklayer >=1.42.0,<1.43.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• libgcc-ng >=7.3.0

• r-base >=3.5.1,<3.5.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chipcomp

and update with:

conda update bioconductor-chipcomp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipcomp:<tag>

(see bioconductor-chipcomp/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chipcomp/README.html)