recipe bioconductor-chipenrich

Gene Set Enrichment For ChIP-seq Peak Data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/chipenrich.html

License

GPL-3

Recipe

/bioconductor-chipenrich/meta.yaml

ChIP-Enrich and Poly-Enrich perform gene set enrichment testing using peaks called from a ChIP-seq experiment. The method empirically corrects for confounding factors such as the length of genes, and the mappability of the sequence surrounding genes.

package bioconductor-chipenrich

Versions

2.18.0-0,  2.16.0-0,  2.14.0-1,  2.14.0-0,  2.12.0-0,  2.10.0-1,  2.8.0-1,  2.6.0-0

Depends

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-chipenrich.data >=2.18.0,<2.19.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-org.dm.eg.db >=3.14.0,<3.15.0

• bioconductor-org.dr.eg.db >=3.14.0,<3.15.0

• bioconductor-org.hs.eg.db >=3.14.0,<3.15.0

• bioconductor-org.mm.eg.db >=3.14.0,<3.15.0

• bioconductor-org.rn.eg.db >=3.14.0,<3.15.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• r-base >=4.1,<4.2.0a0

• r-lattice

• r-latticeextra

• r-mass

• r-mgcv

• r-plyr

• r-rms

• r-stringr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chipenrich

and update with:

conda update bioconductor-chipenrich

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipenrich:<tag>

(see bioconductor-chipenrich/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chipenrich/README.html)