- recipe bioconductor-chipenrich
Gene Set Enrichment For ChIP-seq Peak Data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/chipenrich.html
- License
GPL-3
- Recipe
ChIP-Enrich and Poly-Enrich perform gene set enrichment testing using peaks called from a ChIP-seq experiment. The method empirically corrects for confounding factors such as the length of genes, and the mappability of the sequence surrounding genes.
- package bioconductor-chipenrich¶
-
- Versions
2.18.0-0
,2.16.0-0
,2.14.0-1
,2.14.0-0
,2.12.0-0
,2.10.0-1
,2.8.0-1
,2.6.0-0
- Depends
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-chipenrich.data
>=2.18.0,<2.19.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-org.dm.eg.db
>=3.14.0,<3.15.0
bioconductor-org.dr.eg.db
>=3.14.0,<3.15.0
bioconductor-org.hs.eg.db
>=3.14.0,<3.15.0
bioconductor-org.mm.eg.db
>=3.14.0,<3.15.0
bioconductor-org.rn.eg.db
>=3.14.0,<3.15.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-chipenrich
and update with:
conda update bioconductor-chipenrich
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-chipenrich:<tag>
(see bioconductor-chipenrich/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-chipenrich/README.html)