recipe bioconductor-chipenrich

Gene Set Enrichment For ChIP-seq Peak Data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/chipenrich.html

License:

GPL-3

Recipe:

/bioconductor-chipenrich/meta.yaml

ChIP-Enrich and Poly-Enrich perform gene set enrichment testing using peaks called from a ChIP-seq experiment. The method empirically corrects for confounding factors such as the length of genes, and the mappability of the sequence surrounding genes.

package bioconductor-chipenrich

Versions:

2.22.0-0,  2.18.0-0,  2.16.0-0,  2.14.0-1,  2.14.0-0,  2.12.0-0,  2.10.0-1,  2.8.0-1,  2.6.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-chipenrich.data >=2.22.0,<2.23.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-org.dm.eg.db >=3.16.0,<3.17.0

• bioconductor-org.dr.eg.db >=3.16.0,<3.17.0

• bioconductor-org.hs.eg.db >=3.16.0,<3.17.0

• bioconductor-org.mm.eg.db >=3.16.0,<3.17.0

• bioconductor-org.rn.eg.db >=3.16.0,<3.17.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-lattice

• r-latticeextra

• r-mass

• r-mgcv

• r-plyr

• r-rms

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-chipenrich

and update with:

conda update bioconductor-chipenrich

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipenrich:<tag>

(see bioconductor-chipenrich/tags for valid values for <tag>)

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