recipe bioconductor-chipqc

Quality metrics for ChIPseq data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/ChIPQC.html

License

GPL (>= 3)

Recipe

/bioconductor-chipqc/meta.yaml

Links

biotools: chipqc

Quality metrics for ChIPseq data.

package bioconductor-chipqc

Versions

1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.2-0,  1.18.0-0, 

1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.2-0,  1.18.0-0,  1.16.1-0,  1.14.0-1,  1.14.0-0,  1.12.3-0,  1.10.3-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-chipseq >=1.44.0,<1.45.0

• bioconductor-diffbind >=3.4.0,<3.5.0

• bioconductor-genomicalignments >=1.30.0,<1.31.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-txdb.celegans.ucsc.ce6.ensgene >=3.2.0,<3.3.0

• bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene >=3.2.0,<3.3.0

• bioconductor-txdb.hsapiens.ucsc.hg18.knowngene >=3.2.0,<3.3.0

• bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0

• bioconductor-txdb.mmusculus.ucsc.mm10.knowngene >=3.10.0,<3.11.0

• bioconductor-txdb.mmusculus.ucsc.mm9.knowngene >=3.2.0,<3.3.0

• bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene >=3.2.0,<3.3.0

• r-base >=4.1,<4.2.0a0

• r-ggplot2

• r-gtools

• r-nozzle.r1

• r-reshape2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chipqc

and update with:

conda update bioconductor-chipqc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipqc:<tag>

(see bioconductor-chipqc/tags for valid values for <tag>)

Download stats

Link to this page

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