recipe bioconductor-chipqc

Quality metrics for ChIPseq data

Homepage

https://bioconductor.org/packages/3.12/bioc/html/ChIPQC.html

License

GPL (>= 3)

Recipe

/bioconductor-chipqc/meta.yaml

Links

biotools: chipqc

Quality metrics for ChIPseq data.

package bioconductor-chipqc

Versions

1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.2-0,  1.18.0-0,  1.16.1-0,  1.14.0-1,  1.14.0-0, 

1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.2-0,  1.18.0-0,  1.16.1-0,  1.14.0-1,  1.14.0-0,  1.12.3-0,  1.10.3-0

Depends

• bioconductor-biobase >=2.50.0,<2.51.0

• bioconductor-biocgenerics >=0.36.0,<0.37.0

• bioconductor-biocparallel >=1.24.0,<1.25.0

• bioconductor-chipseq >=1.40.0,<1.41.0

• bioconductor-diffbind >=3.0.0,<3.1.0

• bioconductor-genomicalignments >=1.26.0,<1.27.0

• bioconductor-genomicfeatures >=1.42.0,<1.43.0

• bioconductor-genomicranges >=1.42.0,<1.43.0

• bioconductor-iranges >=2.24.0,<2.25.0

• bioconductor-rsamtools >=2.6.0,<2.7.0

• bioconductor-s4vectors >=0.28.0,<0.29.0

• bioconductor-txdb.celegans.ucsc.ce6.ensgene >=3.2.0,<3.3.0

• bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene >=3.2.0,<3.3.0

• bioconductor-txdb.hsapiens.ucsc.hg18.knowngene >=3.2.0,<3.3.0

• bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0

• bioconductor-txdb.mmusculus.ucsc.mm10.knowngene >=3.10.0,<3.11.0

• bioconductor-txdb.mmusculus.ucsc.mm9.knowngene >=3.2.0,<3.3.0

• bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene >=3.2.0,<3.3.0

• r-base >=4.0,<4.1.0a0

• r-ggplot2

• r-gtools

• r-nozzle.r1

• r-reshape2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chipqc

and update with:

conda update bioconductor-chipqc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipqc:<tag>

(see bioconductor-chipqc/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chipqc/README.html)