-
recipe
bioconductor-chipqc
Quality metrics for ChIPseq data
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/ChIPQC.html
- License
GPL (>= 3)
- Recipe
- Links
biotools: chipqc
Quality metrics for ChIPseq data.
-
package
bioconductor-chipqc
¶ -
- Versions
1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.18.2-0
,1.18.0-0
,1.16.1-0
,1.14.0-1
,1.14.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.18.2-0
,1.18.0-0
,1.16.1-0
,1.14.0-1
,1.14.0-0
,1.12.3-0
,1.10.3-0
- Depends
bioconductor-biobase
>=2.50.0,<2.51.0
bioconductor-biocgenerics
>=0.36.0,<0.37.0
bioconductor-biocparallel
>=1.24.0,<1.25.0
bioconductor-chipseq
>=1.40.0,<1.41.0
bioconductor-diffbind
>=3.0.0,<3.1.0
bioconductor-genomicalignments
>=1.26.0,<1.27.0
bioconductor-genomicfeatures
>=1.42.0,<1.43.0
bioconductor-genomicranges
>=1.42.0,<1.43.0
bioconductor-iranges
>=2.24.0,<2.25.0
bioconductor-rsamtools
>=2.6.0,<2.7.0
bioconductor-s4vectors
>=0.28.0,<0.29.0
bioconductor-txdb.celegans.ucsc.ce6.ensgene
>=3.2.0,<3.3.0
bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene
>=3.2.0,<3.3.0
bioconductor-txdb.hsapiens.ucsc.hg18.knowngene
>=3.2.0,<3.3.0
bioconductor-txdb.hsapiens.ucsc.hg19.knowngene
>=3.2.0,<3.3.0
bioconductor-txdb.mmusculus.ucsc.mm10.knowngene
>=3.10.0,<3.11.0
bioconductor-txdb.mmusculus.ucsc.mm9.knowngene
>=3.2.0,<3.3.0
bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene
>=3.2.0,<3.3.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-chipqc
and update with:
conda update bioconductor-chipqc
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-chipqc:<tag>
(see bioconductor-chipqc/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-chipqc/README.html)