- recipe bioconductor-chipsim
Simulation of ChIP-seq experiments
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/ChIPsim.html
- License:
GPL (>= 2)
- Recipe:
- Links:
biotools: chipsim, doi: 10.1038/nmeth.3252
A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.
- package bioconductor-chipsim¶
-
- Versions:
1.52.0-0
,1.48.0-0
,1.46.0-0
,1.44.0-1
,1.44.0-0
,1.42.0-0
,1.40.0-0
,1.38.0-1
,1.36.0-0
,1.52.0-0
,1.48.0-0
,1.46.0-0
,1.44.0-1
,1.44.0-0
,1.42.0-0
,1.40.0-0
,1.38.0-1
,1.36.0-0
,1.34.0-0
,1.32.0-0
- Depends:
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-shortread
>=1.56.0,<1.57.0
bioconductor-xvector
>=0.38.0,<0.39.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-chipsim
and update with:
conda update bioconductor-chipsim
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-chipsim:<tag>
(see bioconductor-chipsim/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-chipsim/README.html)