recipe bioconductor-chipsim

Simulation of ChIP-seq experiments

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ChIPsim.html

License:

GPL (>= 2)

Recipe:

/bioconductor-chipsim/meta.yaml

Links:

biotools: chipsim, doi: 10.1038/nmeth.3252

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

package bioconductor-chipsim

Versions:

1.52.0-0,  1.48.0-0,  1.46.0-0,  1.44.0-1,  1.44.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.36.0-0, 

1.52.0-0,  1.48.0-0,  1.46.0-0,  1.44.0-1,  1.44.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-shortread >=1.56.0,<1.57.0

• bioconductor-xvector >=0.38.0,<0.39.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-chipsim

and update with:

conda update bioconductor-chipsim

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipsim:<tag>

(see bioconductor-chipsim/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chipsim/README.html)