recipe bioconductor-chromdraw

chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/chromDraw.html

License:

GPL-3

Recipe:

/bioconductor-chromdraw/meta.yaml

Links:

biotools: chromdraw

ChromDraw is a R package for drawing the schemes of karyotype(s) in the linear and circular fashion. It is possible to visualized cytogenetic marsk on the chromosomes. This tool has own input data format. Input data can be imported from the GenomicRanges data structure. This package can visualized the data in the BED file format. Here is requirement on to the first nine fields of the BED format. Output files format are *.eps and *.svg.

package bioconductor-chromdraw

versions:

2.32.0-0,  2.30.0-0,  2.28.0-1,  2.28.0-0,  2.24.0-2,  2.24.0-1,  2.24.0-0,  2.22.0-0,  2.20.0-1, 

2.32.0-0,  2.30.0-0,  2.28.0-1,  2.28.0-0,  2.24.0-2,  2.24.0-1,  2.24.0-0,  2.22.0-0,  2.20.0-1,  2.20.0-0,  2.18.0-0,  2.16.0-0,  2.14.0-1,  2.12.0-0,  2.10.0-0,  2.8.0-0,  2.6.0-0

depends bioconductor-genomicranges:

>=1.54.0,<1.55.0

depends bioconductor-genomicranges:

>=1.54.1,<1.55.0a0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends libstdcxx-ng:

>=12

depends r-base:

>=4.3,<4.4.0a0

depends r-rcpp:

>=0.11.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-chromdraw

and update with::

   mamba update bioconductor-chromdraw

To create a new environment, run:

mamba create --name myenvname bioconductor-chromdraw

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-chromdraw:<tag>

(see `bioconductor-chromdraw/tags`_ for valid values for ``<tag>``)

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