- recipe bioconductor-chromheatmap
Heat map plotting by genome coordinate
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/ChromHeatMap.html
- License
Artistic-2.0
- Recipe
- Links
biotools: chromheatmap, doi: 10.1038/nmeth.3252
The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.
- package bioconductor-chromheatmap¶
-
- Versions
1.48.0-0
,1.46.0-0
,1.44.0-1
,1.44.0-0
,1.42.0-0
,1.40.0-0
,1.38.0-1
,1.36.0-0
,1.34.0-0
,1.48.0-0
,1.46.0-0
,1.44.0-1
,1.44.0-0
,1.42.0-0
,1.40.0-0
,1.38.0-1
,1.36.0-0
,1.34.0-0
,1.32.0-0
- Depends
bioconductor-annotate
>=1.72.0,<1.73.0
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-chromheatmap
and update with:
conda update bioconductor-chromheatmap
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-chromheatmap:<tag>
(see bioconductor-chromheatmap/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-chromheatmap/README.html)