recipe bioconductor-chromheatmap

Heat map plotting by genome coordinate

Homepage

https://bioconductor.org/packages/3.14/bioc/html/ChromHeatMap.html

License

Artistic-2.0

Recipe

/bioconductor-chromheatmap/meta.yaml

Links

biotools: chromheatmap, doi: 10.1038/nmeth.3252

The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.

package bioconductor-chromheatmap

Versions

1.48.0-0,  1.46.0-0,  1.44.0-1,  1.44.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.36.0-0,  1.34.0-0, 

1.48.0-0,  1.46.0-0,  1.44.0-1,  1.44.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0

Depends

• bioconductor-annotate >=1.72.0,<1.73.0

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chromheatmap

and update with:

conda update bioconductor-chromheatmap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chromheatmap:<tag>

(see bioconductor-chromheatmap/tags for valid values for <tag>)

Download stats

Link to this page

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