recipe bioconductor-chromheatmap

Heat map plotting by genome coordinate

Homepage

https://bioconductor.org/packages/3.11/bioc/html/ChromHeatMap.html

License

Artistic-2.0

Recipe

/bioconductor-chromheatmap/meta.yaml

Links

biotools: chromheatmap, doi: 10.1038/nmeth.3252

The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.

package bioconductor-chromheatmap

Versions

1.42.0-0,  1.40.0-0,  1.38.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0

Depends

• bioconductor-annotate >=1.66.0,<1.67.0

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rtracklayer >=1.48.0,<1.49.0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chromheatmap

and update with:

conda update bioconductor-chromheatmap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chromheatmap:<tag>

(see bioconductor-chromheatmap/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chromheatmap/README.html)