- recipe bioconductor-chromstar
Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/chromstaR.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: chromstar, doi: 10.1101/038612
This package implements functions for combinatorial and differential analysis of ChIP-seq data. It includes uni- and multivariate peak-calling, export to genome browser viewable files, and functions for enrichment analyses.
- package bioconductor-chromstar¶
-
- Versions:
1.24.0-0
,1.20.2-1
,1.20.2-0
,1.19.0-0
,1.18.0-0
,1.16.0-2
,1.16.0-1
,1.16.0-0
,1.14.1-0
,1.24.0-0
,1.20.2-1
,1.20.2-0
,1.19.0-0
,1.18.0-0
,1.16.0-2
,1.16.0-1
,1.16.0-0
,1.14.1-0
,1.12.0-1
,1.10.0-1
,1.8.1-0
,1.8.0-0
,1.6.2-0
,1.4.0-0
- Depends:
bioconductor-bamsignals
>=1.30.0,<1.31.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-chromstardata
>=1.24.0,<1.25.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-chromstar
and update with:
conda update bioconductor-chromstar
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-chromstar:<tag>
(see bioconductor-chromstar/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-chromstar/README.html)