recipe bioconductor-chromstar

Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/chromstaR.html

License

Artistic-2.0

Recipe

/bioconductor-chromstar/meta.yaml

Links

biotools: chromstar, doi: 10.1101/038612

This package implements functions for combinatorial and differential analysis of ChIP-seq data. It includes uni- and multivariate peak-calling, export to genome browser viewable files, and functions for enrichment analyses.

package bioconductor-chromstar

Versions

1.14.1-0,  1.12.0-1,  1.10.0-1,  1.8.1-0,  1.8.0-0,  1.6.2-0,  1.4.0-0

Depends

• bioconductor-bamsignals >=1.20.0,<1.21.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-chromstardata >=1.14.0,<1.15.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicalignments >=1.24.0,<1.25.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• libstdcxx-ng >=7.3.0

• r-base >=4.0,<4.1.0a0

• r-doparallel

• r-foreach

• r-ggplot2

• r-mvtnorm

• r-reshape2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chromstar

and update with:

conda update bioconductor-chromstar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chromstar:<tag>

(see bioconductor-chromstar/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chromstar/README.html)