recipe bioconductor-chromstar

This package implements functions for combinatorial and differential analysis of ChIP-seq data. It includes uni- and multivariate peak-calling, export to genome browser viewable files, and functions for enrichment analyses.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/chromstaR.html

License

Artistic-2.0

Recipe

/bioconductor-chromstar/meta.yaml

Links

biotools: chromstar, doi: 10.1101/038612

package bioconductor-chromstar

Versions

1.8.1-0, 1.8.0-0, 1.6.2-0, 1.4.0-0

Depends

• bioconductor-bamsignals >=1.14.0,<1.15.0

• bioconductor-chromstardata >=1.8.0,<1.9.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicalignments >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-base >=3.5.1,<3.5.2.0a0

• r-doparallel

• r-foreach

• r-ggplot2

• r-mvtnorm

• r-reshape2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chromstar

and update with:

conda update bioconductor-chromstar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chromstar:<tag>

(see bioconductor-chromstar/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chromstar/README.html)