recipe bioconductor-chromstar

Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/chromstaR.html

License:

Artistic-2.0

Recipe:

/bioconductor-chromstar/meta.yaml

Links:

biotools: chromstar, doi: 10.1101/038612

This package implements functions for combinatorial and differential analysis of ChIP-seq data. It includes uni- and multivariate peak-calling, export to genome browser viewable files, and functions for enrichment analyses.

package bioconductor-chromstar

Versions:

1.20.2-1,  1.20.2-0,  1.19.0-0,  1.18.0-0,  1.16.0-2,  1.16.0-1,  1.16.0-0,  1.14.1-0,  1.12.0-1, 

1.20.2-1,  1.20.2-0,  1.19.0-0,  1.18.0-0,  1.16.0-2,  1.16.0-1,  1.16.0-0,  1.14.1-0,  1.12.0-1,  1.10.0-1,  1.8.1-0,  1.8.0-0,  1.6.2-0,  1.4.0-0

Depends:

• bioconductor-bamsignals >=1.26.0,<1.27.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-chromstardata >=1.20.0,<1.21.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicalignments >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.1,<4.2.0a0

• r-doparallel

• r-foreach

• r-ggplot2

• r-mvtnorm

• r-reshape2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-chromstar

and update with:

conda update bioconductor-chromstar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chromstar:<tag>

(see bioconductor-chromstar/tags for valid values for <tag>)

Download stats

Link to this page

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