- recipe bioconductor-chromswitch
An R package to detect chromatin state switches from epigenomic data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/chromswitch.html
- License
MIT + file LICENSE
- Recipe
Chromswitch implements a flexible method to detect chromatin state switches between samples in two biological conditions in a specific genomic region of interest given peaks or chromatin state calls from ChIP-seq data.
- package bioconductor-chromswitch¶
-
- Versions
1.16.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.4.1-0
,1.4.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
r-base
>=4.1,<4.2.0a0
r-cluster
>=2.0.6
r-dplyr
>=0.5.0
r-gplots
>=3.0.1
r-lazyeval
>=0.2.0
r-magrittr
>=1.5
r-matrixstats
>=0.52
r-nmf
>=0.20.6
r-tidyr
>=0.6.3
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-chromswitch
and update with:
conda update bioconductor-chromswitch
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-chromswitch:<tag>
(see bioconductor-chromswitch/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-chromswitch/README.html)