recipe bioconductor-chronos

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

Homepage

https://bioconductor.org/packages/3.14/bioc/html/CHRONOS.html

License

GPL-2

Recipe

/bioconductor-chronos/meta.yaml

Links

biotools: CHRONOS

A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.

package bioconductor-chronos

Versions

1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0,  1.8.1-0, 

1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0,  1.8.1-0,  1.6.0-0,  1.4.0-0

Depends

• bioconductor-biomart >=2.50.0,<2.51.0

• bioconductor-graph >=1.72.0,<1.73.0

• bioconductor-rbgl >=1.70.0,<1.71.0

• openjdk

• r-base >=4.1,<4.2.0a0

• r-circlize

• r-doparallel

• r-foreach

• r-igraph

• r-openxlsx

• r-rcurl

• r-rjava

• r-xml

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chronos

and update with:

conda update bioconductor-chronos

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chronos:<tag>

(see bioconductor-chronos/tags for valid values for <tag>)

Download stats

Link to this page

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