recipe bioconductor-chronos

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/CHRONOS.html

License:

GPL-2

Recipe:

/bioconductor-chronos/meta.yaml

Links:

biotools: CHRONOS

A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.

package bioconductor-chronos

(downloads) docker_bioconductor-chronos

versions:
1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0, 

1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0,  1.8.1-0,  1.6.0-0,  1.4.0-0

depends bioconductor-biomart:

>=2.62.0,<2.63.0

depends bioconductor-graph:

>=1.84.0,<1.85.0

depends bioconductor-rbgl:

>=1.82.0,<1.83.0

depends openjdk:

depends r-base:

>=4.4,<4.5.0a0

depends r-circlize:

depends r-doparallel:

depends r-foreach:

depends r-igraph:

depends r-openxlsx:

depends r-rcurl:

depends r-rjava:

depends r-xml:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-chronos

and update with::

   mamba update bioconductor-chronos

To create a new environment, run:

mamba create --name myenvname bioconductor-chronos

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-chronos:<tag>

(see `bioconductor-chronos/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chronos/README.html)