recipe bioconductor-chronos

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

Homepage

https://bioconductor.org/packages/3.11/bioc/html/CHRONOS.html

License

GPL-2

Recipe

/bioconductor-chronos/meta.yaml

Links

biotools: CHRONOS

A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.

package bioconductor-chronos

Versions

1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0,  1.8.1-0,  1.6.0-0,  1.4.0-0

Depends

• bioconductor-biomart >=2.44.0,<2.45.0

• bioconductor-graph >=1.66.0,<1.67.0

• bioconductor-rbgl >=1.64.0,<1.65.0

• openjdk

• r-base >=4.0,<4.1.0a0

• r-circlize

• r-doparallel

• r-foreach

• r-igraph

• r-openxlsx

• r-rcurl

• r-xml

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chronos

and update with:

conda update bioconductor-chronos

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chronos:<tag>

(see bioconductor-chronos/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-chronos/README.html)