- recipe bioconductor-cimice
CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/CIMICE.html
- License:
Artistic-2.0
- Recipe:
CIMICE is a tool in the field of tumor phylogenetics and its goal is to build a Markov Chain (called Cancer Progression Markov Chain, CPMC) in order to model tumor subtypes evolution. The input of CIMICE is a Mutational Matrix, so a boolean matrix representing altered genes in a collection of samples. These samples are assumed to be obtained with single-cell DNA analysis techniques and the tool is specifically written to use the peculiarities of this data for the CMPC construction.
- package bioconductor-cimice¶
-
- Versions:
1.6.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-maftools
>=2.14.0,<2.15.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cimice
and update with:
conda update bioconductor-cimice
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cimice:<tag>
(see bioconductor-cimice/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cimice/README.html)