recipe bioconductor-circseqaligntk

A toolkit for end-to-end analysis of RNA-seq data for circular genomes

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/CircSeqAlignTk.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-circseqaligntk/meta.yaml

CircSeqAlignTk is designed for end-to-end RNA-Seq data analysis of circular genome sequences, from alignment to visualization. It mainly targets viroids which are composed of 246-401 nt circular RNAs. In addition, CircSeqAlignTk implements a tidy interface to generate synthetic sequencing data that mimic real RNA-Seq data, allowing developers to evaluate the performance of alignment tools and workflows.

package bioconductor-circseqaligntk

(downloads) docker_bioconductor-circseqaligntk

Versions:

1.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-circseqaligntk

and update with:

conda update bioconductor-circseqaligntk

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-circseqaligntk:<tag>

(see bioconductor-circseqaligntk/tags for valid values for <tag>)

Download stats