- recipe bioconductor-circseqaligntk
A toolkit for end-to-end analysis of RNA-seq data for circular genomes
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/CircSeqAlignTk.html
- License:
MIT + file LICENSE
- Recipe:
CircSeqAlignTk is designed for end-to-end RNA-Seq data analysis of circular genome sequences, from alignment to visualization. It mainly targets viroids which are composed of 246-401 nt circular RNAs. In addition, CircSeqAlignTk implements a tidy interface to generate synthetic sequencing data that mimic real RNA-Seq data, allowing developers to evaluate the performance of alignment tools and workflows.
- package bioconductor-circseqaligntk¶
-
- Versions:
1.0.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rbowtie2
>=2.4.0,<2.5.0
bioconductor-rhisat2
>=1.14.0,<1.15.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-shortread
>=1.56.0,<1.57.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-circseqaligntk
and update with:
conda update bioconductor-circseqaligntk
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-circseqaligntk:<tag>
(see bioconductor-circseqaligntk/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-circseqaligntk/README.html)