- recipe bioconductor-citefuse
CiteFuse: multi-modal analysis of CITE-seq data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/CiteFuse.html
- License
GPL-3
- Recipe
CiteFuse pacakage implements a suite of methods and tools for CITE-seq data from pre-processing to integrative analytics, including doublet detection, network-based modality integration, cell type clustering, differential RNA and protein expression analysis, ADT evaluation, ligand-receptor interaction analysis, and interactive web-based visualisation of the analyses.
- package bioconductor-citefuse¶
-
- Versions
1.6.0-0
,1.4.0-0
,1.2.0-1
,1.2.0-0
,1.0.0-0
- Depends
bioconductor-rhdf5
>=2.38.0,<2.39.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-scran
>=1.22.0,<1.23.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-citefuse
and update with:
conda update bioconductor-citefuse
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-citefuse:<tag>
(see bioconductor-citefuse/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-citefuse/README.html)