recipe bioconductor-citefuse

CiteFuse: multi-modal analysis of CITE-seq data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/CiteFuse.html

License

GPL-3

Recipe

/bioconductor-citefuse/meta.yaml

CiteFuse pacakage implements a suite of methods and tools for CITE-seq data from pre-processing to integrative analytics, including doublet detection, network-based modality integration, cell type clustering, differential RNA and protein expression analysis, ADT evaluation, ligand-receptor interaction analysis, and interactive web-based visualisation of the analyses.

package bioconductor-citefuse

Versions

1.0.0-0

Depends

• bioconductor-rhdf5 >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-scran >=1.16.0,<1.17.0

• bioconductor-singlecellexperiment >=1.10.0,<1.11.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

• r-cowplot

• r-dbscan

• r-ggplot2

• r-ggraph

• r-ggridges

• r-gridextra

• r-igraph

• r-matrix

• r-mixtools

• r-pheatmap

• r-propr

• r-randomforest

• r-reshape2

• r-rlang

• r-rtsne

• r-scales

• r-snftool

• r-uwot

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-citefuse

and update with:

conda update bioconductor-citefuse

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-citefuse:<tag>

(see bioconductor-citefuse/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-citefuse/README.html)