recipe bioconductor-cleanupdtseq

This package classifies putative polyadenylation sites as true or false/internally oligodT primed

Homepage

https://bioconductor.org/packages/3.10/bioc/html/cleanUpdTSeq.html

License

GPL-2

Recipe

/bioconductor-cleanupdtseq/meta.yaml

Links

biotools: cleanupdtseq

This package implements a Naive Bayes classifier for accurate identification of polyadenylation sites (pA sites) from oligodT based 3 prime end sequencing such as PAS-Seq, PolyA-Seq and RNA-Seq. The classifer is highly accurate and outperforms heuristic methods.

package bioconductor-cleanupdtseq

(downloads) docker_bioconductor-cleanupdtseq

Versions

1.24.0-0, 1.22.2-0, 1.20.0-0, 1.18.0-0, 1.16.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cleanupdtseq

and update with:

conda update bioconductor-cleanupdtseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cleanupdtseq:<tag>

(see bioconductor-cleanupdtseq/tags for valid values for <tag>)