recipe bioconductor-clustall

ClustAll: Data driven strategy to robustly identify stratification of patients within complex diseases

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/ClustAll.html

License:

GPL-2

Recipe:

/bioconductor-clustall/meta.yaml

Data driven strategy to find hidden groups of patients with complex diseases using clinical data. ClustAll facilitates the unsupervised identification of multiple robust stratifications. ClustAll, is able to overcome the most common limitations found when dealing with clinical data (missing values, correlated data, mixed data types).

package bioconductor-clustall

versions:

1.2.0-0

depends bioconductor-complexheatmap:

>=2.22.0,<2.23.0

depends r-base:

>=4.4,<4.5.0a0

depends r-bigstatsr:

depends r-circlize:

depends r-cluster:

depends r-clvalid:

depends r-dosnow:

depends r-dplyr:

depends r-factominer:

depends r-flock:

depends r-foreach:

depends r-fpc:

depends r-ggplot2:

depends r-mice:

depends r-modeest:

depends r-networkd3:

depends r-pbapply:

depends r-rcolorbrewer:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-clustall

and update with::

   mamba update bioconductor-clustall

To create a new environment, run:

mamba create --name myenvname bioconductor-clustall

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-clustall:<tag>

(see `bioconductor-clustall/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

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