- recipe bioconductor-clustifyr
Classifier for Single-cell RNA-seq Using Cell Clusters
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/clustifyr.html
- License:
MIT + file LICENSE
- Recipe:
Package designed to aid in classifying cells from single-cell RNA sequencing data using external reference data (e.g., bulk RNA-seq, scRNA-seq, microarray, gene lists). A variety of correlation based methods and gene list enrichment methods are provided to assist cell type assignment.
- package bioconductor-clustifyr¶
-
- Versions:
1.10.0-0
,1.5.1-0
,1.4.0-0
,1.2.0-1
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-fgsea
>=1.24.0,<1.25.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-clustifyr
and update with:
conda update bioconductor-clustifyr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-clustifyr:<tag>
(see bioconductor-clustifyr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-clustifyr/README.html)