recipe bioconductor-clustifyrdatahub

External data sets for clustifyr in ExperimentHub

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/clustifyrdatahub.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-clustifyrdatahub/meta.yaml

References made from external single-cell mRNA sequencing data sets, stored as average gene expression matrices. For use with clustifyr <https://bioconductor.org/packages/clustifyr> to assign cell type identities.

package bioconductor-clustifyrdatahub

(downloads) docker_bioconductor-clustifyrdatahub

versions:

1.12.0-0,  1.10.0-0,  1.8.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-experimenthub:

>=2.10.0,<2.11.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-clustifyrdatahub

and update with::

   mamba update bioconductor-clustifyrdatahub

To create a new environment, run:

mamba create --name myenvname bioconductor-clustifyrdatahub

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-clustifyrdatahub:<tag>

(see `bioconductor-clustifyrdatahub/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-clustifyrdatahub/README.html)