recipe bioconductor-cnanorm

A normalization method for Copy Number Aberration in cancer samples

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/CNAnorm.html

License:

GPL-2

Recipe:

/bioconductor-cnanorm/meta.yaml

Links:

biotools: cnanorm

Performs ratio, GC content correction and normalization of data obtained using low coverage (one read every 100-10,000 bp) high troughput sequencing. It performs a "discrete" normalization looking for the ploidy of the genome. It will also provide tumour content if at least two ploidy states can be found.

package bioconductor-cnanorm

Versions:

1.44.0-1,  1.44.0-0,  1.40.0-2,  1.40.0-1,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.36.0-0,  1.34.0-0, 

1.44.0-1,  1.44.0-0,  1.40.0-2,  1.40.0-1,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.1-0

Depends:

• bioconductor-dnacopy >=1.72.0,<1.73.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• libgfortran-ng

• libgfortran5 >=12.2.0

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cnanorm

and update with:

conda update bioconductor-cnanorm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cnanorm:<tag>

(see bioconductor-cnanorm/tags for valid values for <tag>)

Download stats

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