recipe bioconductor-cnordt

Add-on to CellNOptR: Discretized time treatments

Homepage

https://bioconductor.org/packages/3.11/bioc/html/CNORdt.html

License

GPL-2

Recipe

/bioconductor-cnordt/meta.yaml

This add-on to the package CellNOptR handles time-course data, as opposed to steady state data in CellNOptR. It scales the simulation step to allow comparison and model fitting for time-course data. Future versions will optimize delays and strengths for each edge.

package bioconductor-cnordt

Versions

1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.1-0,  1.24.0-0

Depends

• bioconductor-cellnoptr >=1.34.0,<1.35.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• r-abind

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cnordt

and update with:

conda update bioconductor-cnordt

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cnordt:<tag>

(see bioconductor-cnordt/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cnordt/README.html)