recipe bioconductor-cnordt

Add-on to CellNOptR: Discretized time treatments

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/CNORdt.html

License:

GPL-2

Recipe:

/bioconductor-cnordt/meta.yaml

This add-on to the package CellNOptR handles time-course data, as opposed to steady state data in CellNOptR. It scales the simulation step to allow comparison and model fitting for time-course data. Future versions will optimize delays and strengths for each edge.

package bioconductor-cnordt

Versions:

1.40.0-0,  1.36.0-2,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0, 

1.40.0-0,  1.36.0-2,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.1-0,  1.24.0-0

Depends:

• bioconductor-cellnoptr >=1.44.0,<1.45.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-abind

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cnordt

and update with:

conda update bioconductor-cnordt

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cnordt:<tag>

(see bioconductor-cnordt/tags for valid values for <tag>)

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