recipe bioconductor-cnvgsa

Gene Set Analysis of (Rare) Copy Number Variants

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/cnvGSA.html

License:

LGPL

Recipe:

/bioconductor-cnvgsa/meta.yaml

Links:

biotools: cnvgsa, doi: 10.1038/nmeth.3252

This package is intended to facilitate gene-set association with rare CNVs in case-control studies.

package bioconductor-cnvgsa

Versions:

1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-0, 

1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0

Depends:

• bioconductor-genomicranges >=1.50.0,<1.51.0

• r-base >=4.2,<4.3.0a0

• r-brglm

• r-doparallel

• r-foreach

• r-splitstackshape

Required By:

• bioconductor-cnvgsadata

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cnvgsa

and update with:

conda update bioconductor-cnvgsa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cnvgsa:<tag>

(see bioconductor-cnvgsa/tags for valid values for <tag>)

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