recipe bioconductor-cnviz

Copy Number Visualization

Homepage

https://bioconductor.org/packages/3.14/bioc/html/CNViz.html

License

Artistic-2.0

Recipe

/bioconductor-cnviz/meta.yaml

CNViz takes probe, gene, and segment-level log2 copy number ratios and launches a Shiny app to visualize your sample's copy number profile. You can also integrate loss of heterozygosity (LOH) and single nucleotide variant (SNV) data.

package bioconductor-cnviz

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-copynumberplots >=1.10.0,<1.11.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-karyoploter >=1.20.0,<1.21.0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-dt

• r-magrittr

• r-plotly

• r-scales

• r-shiny >=1.5.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cnviz

and update with:

conda update bioconductor-cnviz

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cnviz:<tag>

(see bioconductor-cnviz/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cnviz/README.html)