- recipe bioconductor-cnviz
Copy Number Visualization
- Homepage
- License
Artistic-2.0
- Recipe
CNViz takes probe, gene, and segment-level log2 copy number ratios and launches a Shiny app to visualize your sample's copy number profile. You can also integrate loss of heterozygosity (LOH) and single nucleotide variant (SNV) data.
- package bioconductor-cnviz¶
-
- Versions
1.2.0-0
,1.0.0-0
- Depends
bioconductor-copynumberplots
>=1.10.0,<1.11.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-karyoploter
>=1.20.0,<1.21.0
r-base
>=4.1,<4.2.0a0
r-shiny
>=1.5.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-cnviz
and update with:
conda update bioconductor-cnviz
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cnviz:<tag>
(see bioconductor-cnviz/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cnviz/README.html)