recipe bioconductor-cnvmetrics

Copy Number Variant Metrics

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/CNVMetrics.html

License:

Artistic-2.0

Recipe:

/bioconductor-cnvmetrics/meta.yaml

The CNVMetrics package calculates similarity metrics to facilitate copy number variant comparison among samples and/or methods. Similarity metrics can be employed to compare CNV profiles of genetically unrelated samples as well as those with a common genetic background. Some metrics are based on the shared amplified/deleted regions while other metrics rely on the level of amplification/deletion. The data type used as input is a plain text file containing the genomic position of the copy number variations, as well as the status and/or the log2 ratio values. Finally, a visualization tool is provided to explore resulting metrics.

package bioconductor-cnvmetrics

Versions:

1.2.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-gridextra

• r-magrittr

• r-pheatmap

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cnvmetrics

and update with:

conda update bioconductor-cnvmetrics

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cnvmetrics:<tag>

(see bioconductor-cnvmetrics/tags for valid values for <tag>)

Download stats

Link to this page

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