- recipe bioconductor-cnvmetrics
Copy Number Variant Metrics
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/CNVMetrics.html
- License:
Artistic-2.0
- Recipe:
The CNVMetrics package calculates similarity metrics to facilitate copy number variant comparison among samples and/or methods. Similarity metrics can be employed to compare CNV profiles of genetically unrelated samples as well as those with a common genetic background. Some metrics are based on the shared amplified/deleted regions while other metrics rely on the level of amplification/deletion. The data type used as input is a plain text file containing the genomic position of the copy number variations, as well as the status and/or the log2 ratio values. Finally, a visualization tool is provided to explore resulting metrics.
- package bioconductor-cnvmetrics¶
-
- Versions:
1.2.0-0
- Depends:
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cnvmetrics
and update with:
conda update bioconductor-cnvmetrics
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cnvmetrics:<tag>
(see bioconductor-cnvmetrics/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cnvmetrics/README.html)