recipe bioconductor-cnvmetrics

Copy Number Variant Metrics

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/CNVMetrics.html

License:

Artistic-2.0

Recipe:

/bioconductor-cnvmetrics/meta.yaml

The CNVMetrics package calculates similarity metrics to facilitate copy number variant comparison among samples and/or methods. Similarity metrics can be employed to compare CNV profiles of genetically unrelated samples as well as those with a common genetic background. Some metrics are based on the shared amplified/deleted regions while other metrics rely on the level of amplification/deletion. The data type used as input is a plain text file containing the genomic position of the copy number variations, as well as the status and/or the log2 ratio values. Finally, a visualization tool is provided to explore resulting metrics.

package bioconductor-cnvmetrics

(downloads) docker_bioconductor-cnvmetrics

Versions:

1.2.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cnvmetrics

and update with:

conda update bioconductor-cnvmetrics

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cnvmetrics:<tag>

(see bioconductor-cnvmetrics/tags for valid values for <tag>)

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