- recipe bioconductor-cnvrd2
CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data.
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/CNVrd2.html
- License:
GPL-2
- Recipe:
CNVrd2 uses next-generation sequencing data to measure human gene copy number for multiple samples, indentify SNPs tagging copy number variants and detect copy number polymorphic genomic regions.
- package bioconductor-cnvrd2¶
-
- Versions:
1.36.0-0
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.28.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.20.0-0
- Depends:
bioconductor-dnacopy
>=1.72.0,<1.73.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-variantannotation
>=1.44.0,<1.45.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-cnvrd2
and update with:
conda update bioconductor-cnvrd2
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cnvrd2:<tag>
(see bioconductor-cnvrd2/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cnvrd2/README.html)