recipe bioconductor-cnvrd2

CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data.

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/CNVrd2.html

License:

GPL-2

Recipe:

/bioconductor-cnvrd2/meta.yaml

CNVrd2 uses next-generation sequencing data to measure human gene copy number for multiple samples, indentify SNPs tagging copy number variants and detect copy number polymorphic genomic regions.

package bioconductor-cnvrd2

Versions:

1.36.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.20.0-0

Depends:

• bioconductor-dnacopy >=1.72.0,<1.73.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

• r-ggplot2

• r-gridextra

• r-rjags

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cnvrd2

and update with:

conda update bioconductor-cnvrd2

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cnvrd2:<tag>

(see bioconductor-cnvrd2/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cnvrd2/README.html)