recipe bioconductor-cohcap

CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/COHCAP.html

License

GPL-3

Recipe

/bioconductor-cohcap/meta.yaml

Links

biotools: cohcap

COHCAP (pronounced "co-cap") provides a pipeline to analyze single-nucleotide resolution methylation data (Illumina 450k/EPIC methylation array, targeted BS-Seq, etc.). It provides differential methylation for CpG Sites, differential methylation for CpG Islands, integration with gene expression data, with visualizaton options. Discussion Group: https://sourceforge.net/p/cohcap/discussion/bioconductor/

package bioconductor-cohcap

(downloads) docker_bioconductor-cohcap

Versions

1.34.1-01.32.0-11.30.0-11.30.0-01.28.1-01.26.0-01.24.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cohcap

and update with:

conda update bioconductor-cohcap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cohcap:<tag>

(see bioconductor-cohcap/tags for valid values for <tag>)