- recipe bioconductor-comapr
Crossover analysis and genetic map construction
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/comapr.html
- License:
MIT + file LICENSE
- Recipe:
comapr detects crossover intervals for single gametes from their haplotype states sequences and stores the crossovers in GRanges object. The genetic distances can then be calculated via the mapping functions using estimated crossover rates for maker intervals. Visualisation functions for plotting interval-based genetic map or cumulative genetic distances are implemented, which help reveal the variation of crossovers landscapes across the genome and across individuals.
- package bioconductor-comapr¶
-
- Versions:
1.2.0-0
- Depends:
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-gviz
>=1.42.0,<1.43.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-comapr
and update with:
conda update bioconductor-comapr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-comapr:<tag>
(see bioconductor-comapr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-comapr/README.html)