- recipe bioconductor-comethdmr
Accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studies
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/coMethDMR.html
- License:
GPL-3
- Recipe:
coMethDMR identifies genomic regions associated with continuous phenotypes by optimally leverages covariations among CpGs within predefined genomic regions. Instead of testing all CpGs within a genomic region, coMethDMR carries out an additional step that selects co-methylated sub-regions first without using any outcome information. Next, coMethDMR tests association between methylation within the sub-region and continuous phenotype using a random coefficient mixed effects model, which models both variations between CpG sites within the region and differential methylation simultaneously.
- package bioconductor-comethdmr¶
-
- Versions:
1.2.0-0
- Depends:
bioconductor-annotationhub
>=3.6.0,<3.7.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-bumphunter
>=1.40.0,<1.41.0
bioconductor-experimenthub
>=2.6.0,<2.7.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-comethdmr
and update with:
conda update bioconductor-comethdmr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-comethdmr:<tag>
(see bioconductor-comethdmr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-comethdmr/README.html)