recipe bioconductor-compartmap

A/B compartment inference from ATAC-seq and methylation array data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/compartmap.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-compartmap/meta.yaml

Compartmap performs shrunken A/B compartment inference from ATAC-seq and methylation arrays.

package bioconductor-compartmap

Versions

1.6.0-0, 1.4.0-0, 1.2.0-1, 1.0.2-0

Depends

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-homo.sapiens >=1.3.0,<1.4.0

• bioconductor-minfi >=1.34.0,<1.35.0

• bioconductor-mixomics >=6.12.0,<6.13.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

• r-gtools

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-compartmap

and update with:

conda update bioconductor-compartmap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-compartmap:<tag>

(see bioconductor-compartmap/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-compartmap/README.html)