recipe bioconductor-compass

COMPASS is a statistical framework that enables unbiased analysis of antigen-specific T-cell subsets. COMPASS uses a Bayesian hierarchical framework to model all observed cell-subsets and select the most likely to be antigen-specific while regularizing the small cell counts that often arise in multi-parameter space. The model provides a posterior probability of specificity for each cell subset and each sample, which can be used to profile a subject’s immune response to external stimuli such as infection or vaccination.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/COMPASS.html

License

Artistic-2.0

Recipe

/bioconductor-compass/meta.yaml

Links

biotools: compass, doi: 10.1038/nbt.3187

package bioconductor-compass

(downloads) docker_bioconductor-compass

Versions

1.22.0-1, 1.22.0-0, 1.20.1-0, 1.20.0-0, 1.18.1-0, 1.18.0-0, 1.16.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-compass

and update with:

conda update bioconductor-compass

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-compass:<tag>

(see bioconductor-compass/tags for valid values for <tag>)