- recipe bioconductor-compass
Combinatorial Polyfunctionality Analysis of Single Cells
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/COMPASS.html
- License
Artistic-2.0
- Recipe
- Links
biotools: compass, doi: 10.1038/nbt.3187
COMPASS is a statistical framework that enables unbiased analysis of antigen-specific T-cell subsets. COMPASS uses a Bayesian hierarchical framework to model all observed cell-subsets and select the most likely to be antigen-specific while regularizing the small cell counts that often arise in multi-parameter space. The model provides a posterior probability of specificity for each cell subset and each sample, which can be used to profile a subject's immune response to external stimuli such as infection or vaccination.
- package bioconductor-compass¶
-
- Versions
1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.28.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.28.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.20.1-0
,1.20.0-0
,1.18.1-0
,1.18.0-0
,1.16.0-0
- Depends
bioconductor-biocstyle
>=2.22.0,<2.23.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
r-rcpp
>=0.11.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-compass
and update with:
conda update bioconductor-compass
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-compass:<tag>
(see bioconductor-compass/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-compass/README.html)