recipe bioconductor-compepitools

Tools for computational epigenomics

Homepage

https://bioconductor.org/packages/3.14/bioc/html/compEpiTools.html

License

GPL

Recipe

/bioconductor-compepitools/meta.yaml

Links

biotools: compepitools

Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.

package bioconductor-compepitools

Versions

1.27.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-0,  1.14.1-0, 

1.27.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-0,  1.14.1-0,  1.12.0-0,  1.10.0-0

Depends

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-go.db >=3.14.0,<3.15.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-methylpipe >=1.27.0,<1.28.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-topgo >=2.46.0,<2.47.0

• bioconductor-xvector >=0.34.0,<0.35.0

• r-base >=4.1,<4.2.0a0

• r-gplots

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-compepitools

and update with:

conda update bioconductor-compepitools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-compepitools:<tag>

(see bioconductor-compepitools/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-compepitools/README.html)