recipe bioconductor-compepitools

Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/compEpiTools.html

License

GPL

Recipe

/bioconductor-compepitools/meta.yaml

Links

biotools: compepitools

package bioconductor-compepitools

Versions

1.16.0-0, 1.14.1-0, 1.12.0-0, 1.10.0-0

Depends

• bioconductor-annotationdbi >=1.44.0,<1.45.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicfeatures >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-go.db >=3.7.0,<3.8.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-methylpipe >=1.16.0,<1.17.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• bioconductor-topgo >=2.34.0,<2.35.0

• bioconductor-xvector >=0.22.0,<0.23.0

• r-base >=3.5.1,<3.5.2.0a0

• r-gplots

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-compepitools

and update with:

conda update bioconductor-compepitools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-compepitools:<tag>

(see bioconductor-compepitools/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-compepitools/README.html)