recipe bioconductor-condiments

Differential Topology, Progression and Differentiation

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/condiments.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-condiments/meta.yaml

This package encapsulate many functions to conduct a differential topology analysis. It focuses on analyzing an 'omic dataset with multiple conditions. While the package is mostly geared toward scRNASeq, it does not place any restriction on the actual input format.

package bioconductor-condiments

Versions:

1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-distinct >=1.10.0,<1.11.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-slingshot >=2.6.0,<2.7.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-trajectoryutils >=1.6.0,<1.7.0

• r-base >=4.2,<4.3.0a0

• r-dplyr >=1.0

• r-ecume >=0.9.1

• r-igraph

• r-magrittr

• r-matrixstats

• r-mgcv

• r-pbapply

• r-rann

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-condiments

and update with:

conda update bioconductor-condiments

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-condiments:<tag>

(see bioconductor-condiments/tags for valid values for <tag>)

Download stats

Link to this page

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