- recipe bioconductor-consensusseeker
Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/consensusSeekeR.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: consensusseeker, doi: 10.1515/sagmb-2014-0098
This package compares genomic positions and genomic ranges from multiple experiments to extract common regions. The size of the analyzed region is adjustable as well as the number of experiences in which a feature must be present in a potential region to tag this region as a consensus region.
- package bioconductor-consensusseeker¶
-
- Versions:
1.26.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-0
,1.26.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-consensusseeker
and update with:
conda update bioconductor-consensusseeker
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-consensusseeker:<tag>
(see bioconductor-consensusseeker/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-consensusseeker/README.html)