recipe bioconductor-consensusseeker

This package compares genomic positions and genomic ranges from multiple experiments to extract common regions. The size of the analyzed region is adjustable as well as the number of experiences in which a feature must be present in a potential region to tag this region as a consensus region.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/consensusSeekeR.html

License

Artistic-2.0

Recipe

/bioconductor-consensusseeker/meta.yaml

Links

biotools: consensusseeker, doi: 10.1515/sagmb-2014-0098

package bioconductor-consensusseeker

Versions

1.10.0-0, 1.8.0-0, 1.6.0-0

Depends

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-biocparallel >=1.16.0,<1.17.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rtracklayer >=1.42.0,<1.43.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• r-base >=3.5.1,<3.5.2.0a0

• r-stringr

Required By

• bioconductor-rjmcmcnucleosomes

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-consensusseeker

and update with:

conda update bioconductor-consensusseeker

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-consensusseeker:<tag>

(see bioconductor-consensusseeker/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-consensusseeker/README.html)