recipe bioconductor-consensusseeker

Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/consensusSeekeR.html

License:

Artistic-2.0

Recipe:

/bioconductor-consensusseeker/meta.yaml

Links:

biotools: consensusseeker, doi: 10.1515/sagmb-2014-0098

This package compares genomic positions and genomic ranges from multiple experiments to extract common regions. The size of the analyzed region is adjustable as well as the number of experiences in which a feature must be present in a potential region to tag this region as a consensus region.

package bioconductor-consensusseeker

Versions:

1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0,  1.8.0-0, 

1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0

Depends:

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• r-base >=4.1,<4.2.0a0

• r-stringr

Required By:

• bioconductor-rjmcmcnucleosomes

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-consensusseeker

and update with:

conda update bioconductor-consensusseeker

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-consensusseeker:<tag>

(see bioconductor-consensusseeker/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-consensusseeker/README.html)