recipe bioconductor-conumee

Enhanced copy-number variation analysis using Illumina DNA methylation arrays

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/conumee.html

License:

GPL (>= 2)

Recipe:

/bioconductor-conumee/meta.yaml

This package contains a set of processing and plotting methods for performing copy-number variation (CNV) analysis using Illumina 450k or EPIC methylation arrays.

package bioconductor-conumee

Versions:

1.32.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1

Depends:

• bioconductor-dnacopy >=1.72.0,<1.73.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0

• bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0

• bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19 >=0.6.0,<0.7.0

• bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-minfi >=1.44.0,<1.45.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-conumee

and update with:

conda update bioconductor-conumee

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-conumee:<tag>

(see bioconductor-conumee/tags for valid values for <tag>)

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