- recipe bioconductor-conumee
Enhanced copy-number variation analysis using Illumina DNA methylation arrays
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/conumee.html
- License:
GPL (>= 2)
- Recipe:
This package contains a set of processing and plotting methods for performing copy-number variation (CNV) analysis using Illumina 450k or EPIC methylation arrays.
- package bioconductor-conumee¶
-
- Versions:
1.32.0-0
,1.26.0-0
,1.24.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
- Depends:
bioconductor-dnacopy
>=1.72.0,<1.73.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19
>=0.6.0,<0.7.0
bioconductor-illuminahumanmethylation450kmanifest
>=0.4.0,<0.5.0
bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19
>=0.6.0,<0.7.0
bioconductor-illuminahumanmethylationepicmanifest
>=0.3.0,<0.4.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-minfi
>=1.44.0,<1.45.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-conumee
and update with:
conda update bioconductor-conumee
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-conumee:<tag>
(see bioconductor-conumee/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-conumee/README.html)