recipe bioconductor-copyhelper

This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.

Homepage

https://bioconductor.org/packages/3.9/data/experiment/html/CopyhelpeR.html

License

GPL-2

Recipe

/bioconductor-copyhelper/meta.yaml

package bioconductor-copyhelper

(downloads) docker_bioconductor-copyhelper

Versions

1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-0

Depends curl

>=7.64.1,<8.0a0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-copyhelper

and update with:

conda update bioconductor-copyhelper

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-copyhelper:<tag>

(see bioconductor-copyhelper/tags for valid values for <tag>)