-
recipe
bioconductor-cosmiq
¶ cosmiq - COmbining Single Masses Into Quantities
- Homepage
https://bioconductor.org/packages/3.10/bioc/html/cosmiq.html
- License
GPL-3
- Recipe
- Links
biotools: cosmiq, doi: 10.5167/uzh-107947
cosmiq is a tool for the preprocessing of liquid- or gas - chromatography mass spectrometry (LCMS/GCMS) data with a focus on metabolomics or lipidomics applications. To improve the detection of low abundant signals, cosmiq generates master maps of the mZ/RT space from all acquired runs before a peak detection algorithm is applied. The result is a more robust identification and quantification of low-intensity MS signals compared to conventional approaches where peak picking is performed in each LCMS/GCMS file separately. The cosmiq package builds on the xcmsSet object structure and can be therefore integrated well with the package xcms as an alternative preprocessing step.
-
package
bioconductor-cosmiq
¶ -
- Versions
1.20.0-1, 1.18.0-1, 1.16.1-0, 1.16.0-0, 1.12.0-0
- Depends
bioconductor-faahko >=1.26.0,<1.27.0
bioconductor-massspecwavelet >=1.52.0,<1.53.0
bioconductor-xcms >=3.8.0,<3.9.0
libgcc-ng >=7.3.0
libstdcxx-ng >=7.3.0
r-base >=3.6,<3.7.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-cosmiq
and update with:
conda update bioconductor-cosmiq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cosmiq:<tag>
(see bioconductor-cosmiq/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cosmiq/README.html)