recipe bioconductor-countsimqc

countsimQC provides functionality to create a comprehensive report comparing a broad range of characteristics across a collection of count matrices. One important use case is the comparison of one or more synthetic count matrices to a real count matrix, possibly the one underlying the simulations. However, any collection of count matrices can be compared.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/countsimQC.html

License

GPL (>=2)

Recipe

/bioconductor-countsimqc/meta.yaml

package bioconductor-countsimqc

(downloads) docker_bioconductor-countsimqc

Versions

1.0.0-0

Depends bioconductor-deseq2

>=1.22.0,<1.23.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends bioconductor-genefilter

>=1.64.0,<1.65.0

Depends bioconductor-genomeinfodbdata

>=1.2.0,<1.3.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-catools

Depends r-dplyr

Depends r-dt

Depends r-ggplot2

Depends r-randtests

Depends r-rmarkdown

>=0.9.5

Depends r-tidyr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-countsimqc

and update with:

conda update bioconductor-countsimqc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-countsimqc:<tag>

(see bioconductor-countsimqc/tags for valid values for <tag>)