recipe bioconductor-coverageview

Coverage visualization package for R

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/CoverageView.html

License:

Artistic-2.0

Recipe:

/bioconductor-coverageview/meta.yaml

This package provides a framework for the visualization of genome coverage profiles. It can be used for ChIP-seq experiments, but it can be also used for genome-wide nucleosome positioning experiments or other experiment types where it is important to have a framework in order to inspect how the coverage distributed across the genome

package bioconductor-coverageview

Versions:

1.36.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.20.0-0

Depends:

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-coverageview

and update with:

conda update bioconductor-coverageview

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-coverageview:<tag>

(see bioconductor-coverageview/tags for valid values for <tag>)

Download stats

Link to this page

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