recipe bioconductor-crisprbase

Base functions and classes for CRISPR gRNA design

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/crisprBase.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-crisprbase/meta.yaml

Provides S4 classes for general nucleases, CRISPR nucleases, CRISPR nickases, and base editors.Several CRISPR-specific genome arithmetic functions are implemented to help extract genomic coordinates of spacer and protospacer sequences. Commonly-used CRISPR nuclease objects are provided that can be readily used in other packages. Both DNA- and RNA-targeting nucleases are supported.

package bioconductor-crisprbase

Versions:

1.2.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-stringr

Required By:

• bioconductor-crisprbowtie

• bioconductor-crisprviz

• bioconductor-crisprverse

• bioconductor-crisprdesign

• bioconductor-crisprbwa

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-crisprbase

and update with:

conda update bioconductor-crisprbase

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-crisprbase:<tag>

(see bioconductor-crisprbase/tags for valid values for <tag>)

Download stats

Link to this page

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