- recipe bioconductor-crisprbase
Base functions and classes for CRISPR gRNA design
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/crisprBase.html
- License:
MIT + file LICENSE
- Recipe:
Provides S4 classes for general nucleases, CRISPR nucleases, CRISPR nickases, and base editors.Several CRISPR-specific genome arithmetic functions are implemented to help extract genomic coordinates of spacer and protospacer sequences. Commonly-used CRISPR nuclease objects are provided that can be readily used in other packages. Both DNA- and RNA-targeting nucleases are supported.
- package bioconductor-crisprbase¶
-
- Versions:
1.2.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-crisprbase
and update with:
conda update bioconductor-crisprbase
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-crisprbase:<tag>
(see bioconductor-crisprbase/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-crisprbase/README.html)