- recipe bioconductor-crisprbowtie
Bowtie-based alignment of CRISPR gRNA spacer sequences
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/crisprBowtie.html
- License:
MIT + file LICENSE
- Recipe:
Provides a user-friendly interface to map on-targets and off-targets of CRISPR gRNA spacer sequences using bowtie. The alignment is fast, and can be performed using either commonly-used or custom CRISPR nucleases. The alignment can work with any reference or custom genomes. Both DNA- and RNA-targeting nucleases are supported.
- package bioconductor-crisprbowtie¶
-
- Versions:
1.2.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-bsgenome
>=1.66.0,<1.67.0
bioconductor-crisprbase
>=1.2.0,<1.3.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rbowtie
>=1.38.0,<1.39.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-crisprbowtie
and update with:
conda update bioconductor-crisprbowtie
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-crisprbowtie:<tag>
(see bioconductor-crisprbowtie/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-crisprbowtie/README.html)